There are two ways of setting up payments through Stripe, this one which is automatic payments and the other option is to set up through a link on the invoice sent to the customer by email, or as a link in the email.
When creating an order for an account that will be charged automatically through Stripe, presuming the Stripe connection is set up, a field named Payment Method will have been added to the order head. Here, choose 'Stripe' as a payment method.
When you have activated the order, you will see that there is a warning message next to the Payment Method field, this is because there are no payment details gathered from the client. You will not be able to invoice the client for Stripe orders before the payment details are gathered. To request the payment details, press REQUEST PAYMENT DETAILS and press YES in the dialog.
The warning symbol by Payment Method has now changed, meaning that the payment details have been requested.
When the payment details have been updated, the symbol will be a green checkmark indicating that you can go ahead and send invoices to the client and all its Stripe orders.
Invoice & Payment
When you have created and posted an invoice for the Stripe order, if a Stripe job is scheduled for automatic invoice payments, the payments will be processed by the invoice due date unless you press Process Payment
Payments for an invoice will be shown in the 'Stripe payment information' box and the financial transaction will be automatically recorded and included in the period's payment and payout journals.
The payment transaction will be recorded on the payment and payout journals